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     We have created an eXtensible Markup Language (XML)-based data exchange format VIOLINML for VIOLIN data exchange. The VIOLINML DTD or XML Schema defines VIOLINML. We also ceates a web page in Here to explain the details of the VIOLINML data structure.

     XML uses simple text-based markup to describe the structure and semantics of ordered data, thereby allowing for standardized data formatting and interchange. VIOLINML allows for a portable, system-independent, machine-parseable, and human-readable representation of general vaccine information for a particular pathogen stored in VIOLIN. You can download individual VIOLINML documents below.

Index Pathogen Name Disease Export to XML
1 Actinobacillus pleuropneumoniae porcine pleuropneumonia VIOLINML
2 Adenovirus Respiratory infection VIOLINML
3 Aeromonas hydrophila VIOLINML
4 Aeromonas salmonicida Furunculosis, Bald sea urchin disease VIOLINML
5 African horse sickness virus VIOLINML
6 African Swine Fever Virus African Swine Fever VIOLINML
7 Allergy Allergy VIOLINML
8 Arthritis VIOLINML
9 Atherosclerosis Atherosclerosis, arteriosclerotic vascular disease (ASVD) VIOLINML
10 Avian Encephalomyelitis Virus Avian Encephalomyelitis VIOLINML
11 Avian Paramyxovirus VIOLINML
12 Avian pneumovirus Turkey rhinotracheitis, Avian rhinotracheitis, Swollen head syndrome VIOLINML
13 Avian Polyomavirus Papovavirus, Budgerigar fledgling disease, Psittacine polyomavirus VIOLINML
14 Avian Reovirus Viral Arthritis, Pale Bird Syndrome, Tenosynovitis VIOLINML
15 Babesia bovis Babesiosis, Texas Cattle Fever VIOLINML
16 Babesia canis Piroplasmosis VIOLINML
17 Bacillus anthracis Anthrax VIOLINML
18 Bifidobacterium bifidum PRL2010 VIOLINML
19 Bluetongue virus Bluetongue disesase VIOLINML
20 Bordetella avium Bordetellosis VIOLINML
21 Bordetella bronchiseptica Infectious bronchitis, kennel cough VIOLINML
22 Bordetella pertussis Whooping Cough VIOLINML
23 Borna disease virus VIOLINML
24 Borrelia burgdorferi Lyme Disease VIOLINML
25 Bovine coronavirus VIOLINML
26 Bovine herpesvirus 1 Infectious bovine rhinotracheitis VIOLINML
27 Bovine Leukemia virus VIOLINML
28 Bovine papillomavirus Warts VIOLINML
29 Bovine Parainfluenza 3 Virus (BPIV-3) VIOLINML
30 Bovine Respiratory Syncytial Virus Respiratory Disease VIOLINML
31 Bovine viral diarrhea virus 1 Bovine viral Diarrhea (BVD) VIOLINML
32 Bovine viral diarrhea virus 2 Bovine viral diarrhea VIOLINML
33 Brucella spp. Brucellosis VIOLINML
34 Burkholderia pseudomallei Melioidosis VIOLINML
35 Campylobacter fetus bovine venereal campylobacteriosis (BVC) VIOLINML
36 Campylobacter jejuni Campylobacterosis VIOLINML
37 Canarypox virus Canary Pox VIOLINML
38 Cancer Cancer VIOLINML
39 Canine adenovirus type 1 Fox Encephalitis, Infectious Canine Hepatitis VIOLINML
40 Canine Adenovirus Type 2 VIOLINML
41 Canine coronavirus Intestinal disease VIOLINML
42 Canine distemper virus Canine distemper VIOLINML
43 Canine parainfluenza virus VIOLINML
44 Canine parvovirus Canine parvovirus infection VIOLINML
45 Caprine herpesvirus type 1 (CpHV-1) VIOLINML
46 Chicken Anemia Virus Chicken infectious anemia, Blue wing disease, Anemia dermatitis syndrome, Hemorrhagic aplastic anemi VIOLINML
47 chikungunya virus VIOLINML
48 Chlamydia muridarum VIOLINML
49 Chlamydia trachomatis Chlamydia VIOLINML
50 Chlamydophila abortus Abortion and fetal death VIOLINML
51 Chlamydophila pneumoniae Pneumonia VIOLINML
52 Chlamydophila psittaci Respiratory psittacosis, avian chlamydiosis VIOLINML
53 Classical swine fever virus Classical swine fever, hog cholera VIOLINML
54 Clostridium botulinum Botulism VIOLINML
55 Clostridium perfringens Food poisioning, Gas gangrene VIOLINML
56 Clostridium tetani Tetanus VIOLINML
57 Coccidioides spp. Coccidioidomycosis (California disease, Desert rheumatism, San Joaquin valley fever, and Valley fev VIOLINML
58 Corynebacterium diphtheriae Diphtheria VIOLINML
59 Corynebacterium pseudotuberculosis VIOLINML
60 Coxiella burnetii Q fever VIOLINML
61 Crimean-Congo Haemorrhagic Fever (CCHF) VIOLINML
62 Cryptosporidium parvum Cryptosporidiosis VIOLINML
63 Dengue Virus Dengue Fever VIOLINML
64 Determination of Amino Acid Composition VIOLINML
65 Diabetes Diabetes VIOLINML
66 Duck enteritis virus Duck Plague VIOLINML
67 Duck hepatitis virus 1 Duck virus hepatitis (DVH) VIOLINML
68 Eastern Equine Encephalitis Virus Encephalitis VIOLINML
69 Ebola virus Ebola hemorrhagic fever VIOLINML
70 Edwardsiella ictaluri Enteric septicemia of channel catfish (ESC) VIOLINML
71 Edwardsiella tarda VIOLINML
72 Eimeria acervulina VIOLINML
73 Eimeria maxima Coccidiosis VIOLINML
74 Eimeria spp. Coccidiosis VIOLINML
75 Eimeria tenella Hemorrhagic cecal coccidiosis VIOLINML
76 Entamoeba histolytica Amoebiasis VIOLINML
77 Equid herpesvirus Equine Rhinopneumonitis VIOLINML
78 Equine arteritis virus Equine arteritis VIOLINML
79 Equine rotavirus Rotaviral Diarrhea VIOLINML
80 Erysipelothrix rhusiopathiae Erysipelas VIOLINML
81 Escherichia coli Hemorrhagic colitis VIOLINML
82 Experimental autoimmune encephalomyelitis Experimental autoimmune encephalomyelitis (EAE) VIOLINML
83 Experimental autoimmune uveitis Experimental autoimmune uveitis VIOLINML
84 Feline calicivirus Feline Respiratory Infections VIOLINML
85 Feline herpesvirus 1 Feline viral rhinotracheitis VIOLINML
86 Feline immunodeficiency virus Feline AIDS VIOLINML
87 Feline infectious peritonitis virus Feline infectious peritonitis (FIP) VIOLINML
88 Feline leukemia virus Feline leukemia virus infection VIOLINML
89 Feline panleukopenia virus Feline Distemper VIOLINML
90 Flavobacterium columnare Columnaris VIOLINML
91 Foot-and-mouth disease virus Foot-and-mouth disease VIOLINML
92 Fowlpox virus Fowlpox VIOLINML
93 Francisella tularensis Tularemia VIOLINML
94 Gallid herpesvirus 1 Avian infectious laryngotracheitis, Fowl Laryngotracheitis VIOLINML
95 Giardia duodenalis Giardiasis (Beaver fever) VIOLINML
96 Haemophilus influenzae Meningitis VIOLINML
97 Haemophilus parasuis Glasser's disease VIOLINML
98 Haemophilus somnus VIOLINML
99 Hantavirus Hantavirus Pulmonary Syndrome VIOLINML
100 Helicobacter pylori Ulcers VIOLINML
101 Hendra virus Hendra virus disease VIOLINML
102 Hepatitis A virus Hepatitis A VIOLINML
103 Hepatitis B virus Hepatitis B VIOLINML
104 Hepatitis C virus Hepatitis C VIOLINML
105 Hepatitis D virus VIOLINML
106 Hepatitis E virus Hepatitis E VIOLINML
107 Herpes simplex virus type 1 and 2 Herpes VIOLINML
108 Hirame rhabdovirus VIOLINML
109 Human coxsackievirus VIOLINML
110 Human cytomegalovirus VIOLINML
111 Human Immunodeficiency Virus Acquired Immunodeficiency Syndrome (AIDS) VIOLINML
112 Human metapneumovirus Respiratory tract infection VIOLINML
113 Human Papillomavirus HPV infection VIOLINML
114 Human Respiratory Syncytial Virus Respiratory tract disease VIOLINML
115 Infectious Bronchitis Virus (IBV) Infectious Bronchitis VIOLINML
116 Infectious Bursal Disease Virus (IBDV) Infectious Bursal Disease VIOLINML
117 Infectious Hematopoietic Necrosis Virus Infectious hematopoietic necrosis VIOLINML
118 infectious laryngotracheitis virus VIOLINML
119 Infectious pancreatic necrosis virus VIOLINML
120 Infectious salmon anemia virus Infectious Salmon Anemia VIOLINML
121 Influenza virus Influenza (flu) VIOLINML
122 Japanese encephalitis virus Japanese encephalitis VIOLINML
123 Klebsiella pneumoniae Pneumonia, Bloodstream infections, Abscess VIOLINML
124 Lassa Fever Virus Lassa fever VIOLINML
125 Lawsonia intracellularis Lawsonia intracellularis infection VIOLINML
126 Leishmania amazonensis Leishmaniasis VIOLINML
127 Leishmania donovani Visceral leishmaniasis VIOLINML
128 Leishmania infantum Infantile visceral leishmaniasis VIOLINML
129 Leishmania major Cutaneous leishmaniasis VIOLINML
130 Leptospira spp. Leptospirosis VIOLINML
131 Listeria monocytogenes Listeriosis VIOLINML
132 Lymphocytic choriomeningitis virus Lymphocytic choriomeningitis VIOLINML
133 Mannheimia haemolytica Bovine Respiratory Disease VIOLINML
134 Marburg Virus Hemorrhagic fever VIOLINML
135 Marek's disease virus Marek's disease VIOLINML
136 Measles virus Measles VIOLINML
137 MERS-CoV Middle East Respiratory Syndrome (MERS) VIOLINML
138 Mink enteritis virus Mink Enteritis VIOLINML
139 Mumps virus Mumps VIOLINML
140 Murine Cytomegalovirus VIOLINML
141 Murine leukemia virus VIOLINML
142 Mycobacterium avium VIOLINML
143 Mycobacterium bovis Tuberculosis VIOLINML
144 Mycobacterium marinum VIOLINML
145 Mycobacterium tuberculosis Tuberculosis VIOLINML
146 Mycoplasma gallisepticum Chronic respiratory disease VIOLINML
147 Mycoplasma hyopneumoniae Porcine Enzootic Pneumonia VIOLINML
148 Mycoplasma synoviae Respiratory tract disease and synovitis VIOLINML
149 Neisseria meningitidis Meningitis VIOLINML
150 Neospora caninum Neosporosis VIOLINML
151 Newcastle disease virus Newcastle disease VIOLINML
152 Nipah virus Nipah virus disease VIOLINML
153 Orf Virus Orf disease, Sore mouth (Ovine Ecthyma) VIOLINML
154 Parainfluenza virus VIOLINML
155 Pasteurella multocida Pasteurellosis, fowl cholera VIOLINML
156 Pigeonpox virus Pigeon Pox VIOLINML
157 Piscirickettsia salmonis Salmon Rickettsial Disease, Piscirickettsiosis VIOLINML
158 Plasmodium spp. Malaria VIOLINML
159 Poliovirus Polio VIOLINML
160 Porcine circovirus 2 Postweaning multisystemic wasting syndrome VIOLINML
161 Porcine parvovirus SMEDI, reproductive failure VIOLINML
162 Porcine respiratory and reproductive syndrome virus Porcine Reproductive and Respiratory Syndrome (PRRS), Blue-Ear Pig Disease VIOLINML
163 Porcine rotavirus Diarrhea VIOLINML
164 Porphyromonas gulae Canine periodontitis VIOLINML
165 Pseudomonas aeruginosa Pseudomonas aeruginosa infection VIOLINML
166 Pseudorabies virus Aujeszky's disease VIOLINML
167 Psittacid herpesvirus 1 Pacheco's Parrot Disease VIOLINML
168 Rabbit hemorrhagic disease virus Rabbit hemorrhagic disease VIOLINML
169 Rabies virus Rabies VIOLINML
170 Reticuloendotheliosis Virus Tumors, wasting syndrome VIOLINML
171 Ricin toxin of Ricinus communis Ricin poisoning VIOLINML
172 Rickettsia rickettsii VIOLINML
173 Rickettsia spp Spotted Fever, Typhus VIOLINML
174 Riemerella anatipestifer New duck disease, Infectious serositis, Pasteurella anatipestifer infection VIOLINML
175 Rift Valley Fever virus Rift valley fever VIOLINML
176 rinderpest virus VIOLINML
177 Rotavirus Gastroenteritis VIOLINML
178 Rubella virus Rubella VIOLINML
179 Salmonella spp. Salmonellosis VIOLINML
180 Sarcocystis neurona Equine protozoal myeloencephalitis VIOLINML
181 SARS-CoV Severe Acute Respiratory Syndrome (SARS) VIOLINML
183 Schistosoma japonicum Schistosomiasis VIOLINML
184 Schistosoma mansoni Schistosomiasis VIOLINML
185 Shigella Shigellosis VIOLINML
186 Simian Immunodeficiency Virus Simian AIDS VIOLINML
187 Sindbis virus Encephalitis VIOLINML
188 Staphylococcus aureus Staph infections VIOLINML
189 Streptococcus agalactiae Group B streptococcus (GBS) infection VIOLINML
190 Streptococcus equi Strangles (also equine distemper) VIOLINML
191 Streptococcus pneumoniae Pneumonia VIOLINML
192 Streptococcus pyogenes Group A streptococcal infections, Strep throat, Scarlet fever VIOLINML
193 Streptococcus suis VIOLINML
194 Theileria annulata Theileriosis VIOLINML
195 Theileria parva East Coast Fever VIOLINML
196 Tick-borne Encephalitis Virus (TBEV) Tick-borne Encephalitis VIOLINML
197 Toxoplasma gondii Toxoplasmosis VIOLINML
198 Transmissible gastroenteritis virus Porcine transmissible gastroenteritis VIOLINML
199 Treponema pallidum Syphilis VIOLINML
200 Trichinella spiralis VIOLINML
201 Trichomonas foetus VIOLINML
202 Trypanosoma brucei African trypanosomiasis (African Sleeping Sickness) VIOLINML
203 Trypanosoma cruzi Chagas disease VIOLINML
204 Turkey hemorrhagic enteritis virus Hemorrhagic enteritis VIOLINML
205 Vaccinia virus VIOLINML
206 Varicella-zoster virus chickenpox / shingles VIOLINML
207 Variola virus Smallpox VIOLINML
208 VEE Virus Venezuelan equine encephalitis VIOLINML
209 Vibrio anguillarum (Listonella anguillarum) Vibrosis VIOLINML
210 Vibrio cholerae Cholera VIOLINML
211 Vibrio vulnificus VIOLINML
212 Viral haemorrhagic septicaemia virus VIOLINML
213 West Nile virus West Nile fever VIOLINML
214 Western equine encephalomyelitis virus Western equine encephalomyelitis (WEE) VIOLINML
215 Yellow fever virus Yellow fever VIOLINML
216 Yersinia enterocolitica Yersiniosis VIOLINML
217 Yersinia pestis Plague VIOLINML
218 Yersinia pseudotuberculosis Yersiniosis VIOLINML
219 Yersinia ruckeri Enteric redmouth disease VIOLINML

     Provenance: All VIOLINML documents are created on the fly from the data stored in the VIOLIN database.