VIOLIN: Vaccine Investigation and Online Information Network

Vaxgen: Vaccine-related Genes and Protective Antigens

Vaxgen is targeted for collection and analysis of vaccine-related pathogen and host genes and proteins, with a special focus on pathogen protective antigens and host protective immune factors. The data in Vaxgen comes from the manually curated VIOLIN database. Users are encouraged to submit vaccine-related genes through the VIOLIN online submission system.

Vaxgen Search
Search Field	Search Parameter
Pathogen Genome
Pathogen-Host Interaction
Gene Name	(e.g., sodC)
Locus Tag	(e.g., BAB2_0535)
NCBI Gene GI	(e.g., 3827840)
NCBI Nucleotide GI	(e.g., 3827840)
Gene Position	start end
NCBI Protein RefSeq	(e.g., YP_418725.1)
NCBI Protein GI	(e.g., 83269434)
Other Database ID	(e.g., P56963)
Protein Molecular Weight	Greater than Less than
Protein pI	Greater than Less than
Description	(e.g., superoxide dismutase)
Sort Order
First:
Second:

BLAST search for genes and proteins associated with vaccine:

Vaccine-related genes and proteins can also be searched based on sequence similarity using BLAST. Please provide your sequence data as input, and this program will output vaccine-related genes and proteins which has sequences similar to your input sequence.

BLAST for genes and proteins associated with vaccine:

Program Database

Enter here your input data as

Or load it from disk

Statistics: Vaxgen includes 4257 genes for now.

Provenance: The data in Vaxgen originates from the VIOLIN database.