<?xml version="1.0" encoding="UTF-8"?>
<VIOLIN>
	<pathogen pathogen_id="pathogen256">
		<pathogen_name>Bovine viral diarrhea virus 2</pathogen_name>
		<taxon_id>54315</taxon_id>
		<pathogenesis refs=""></pathogenesis>
		<disease_name>Bovine viral diarrhea</disease_name>
		<protective_immunity refs=""></protective_immunity>
		<host_range refs="reference2657">Cows (Merck Vet Manual: Bovine Viral Diarrhea)</host_range>
		<introduction refs="reference2657">Bovine viral diarrheal virus (BVDV), the causal agent of BVD and mucosal disease complex, is classified in the genus Pestivirus in the family Flaviviridae. Although cattle are the primary host for BVDV, several reports suggest most even-toed ungulates are also susceptible.  Based on comparisons of nucleotide sequence in the viral RNA, there are at least 2 viral genotypes (distinct genetic groups) of BVDV that can be further divided into subgenotypes or genogroups. The viral genotypes are termed BVDV type 1 and BVDV type 2, and both cytopathic and noncytopathic BVDV are represented in each viral genotype. The subgenotypes are clusters of viruses within a viral genotype that are highly similar in nucleotide sequence of the viral RNA. (Subgenotypes are designated by lower case letters; thus, subgenotypes of genotype 1 BVDV would be represented as 1a, 1b, 1c, etc.) Currently, the number of viral subgenotypes remains unknown. Based on sequence of several hundred nucleotides of select regions of viral RNA, type 1 BVDV has at least 12â€“15 subgenotypes and type 2 BVDV has at least 2 subgenotypes (Merck Vet Manual: Bovine Viral Diarrhea).</introduction>
	</pathogen>

	<host host_id="host55">
		<common_name>Baboon</common_name>
		<scientific_name>Papio cynocephalus</scientific_name>
		<taxon_id>9556</taxon_id>
    </host>
	<host host_id="host43">
		<common_name>Bank vole</common_name>
		<scientific_name>Clethrionomys glareolus</scientific_name>
		<taxon_id>447135</taxon_id>
    </host>
	<host host_id="host31">
		<common_name>Bear</common_name>
		<scientific_name>Ursus americanus</scientific_name>
		<taxon_id>9643</taxon_id>
    </host>
	<host host_id="host51">
		<common_name>Birds</common_name>
		<scientific_name>Passeroidea</scientific_name>
		<taxon_id>175121</taxon_id>
    </host>
	<host host_id="host35">
		<common_name>Brown Trout</common_name>
		<scientific_name>Salmo trutta</scientific_name>
		<taxon_id>8032</taxon_id>
    </host>
	<host host_id="host30">
		<common_name>Buffalo</common_name>
		<scientific_name>Bison bison</scientific_name>
		<taxon_id>9901</taxon_id>
    </host>
	<host host_id="host53">
		<common_name>Carnivores</common_name>
		<scientific_name>Vulpes</scientific_name>
		<taxon_id>9625</taxon_id>
    </host>
	<host host_id="host37">
		<common_name>Cat</common_name>
		<scientific_name>Felis catus</scientific_name>
		<taxon_id>9685</taxon_id>
    </host>
	<host host_id="host52">
		<common_name>Catfishes</common_name>
		<scientific_name>Siluriformes</scientific_name>
		<taxon_id>7995</taxon_id>
    </host>
	<host host_id="host12">
		<common_name>Cattle</common_name>
		<scientific_name>Bos taurus</scientific_name>
		<taxon_id>9913</taxon_id>
    </host>
	<host host_id="host8">
		<common_name>Chicken</common_name>
		<scientific_name>Gallus gallus</scientific_name>
		<taxon_id>9031</taxon_id>
    </host>
	<host host_id="host42">
		<common_name>Chimpanzee</common_name>
		<scientific_name>Pan troglodytes</scientific_name>
		<taxon_id>9598</taxon_id>
    </host>
	<host host_id="host26">
		<common_name>chinchillas</common_name>
		<scientific_name>Chinchillidae</scientific_name>
		<taxon_id>10150</taxon_id>
    </host>
	<host host_id="host24">
		<common_name>Copper Pheasant</common_name>
		<scientific_name>Syrmaticus soemmerringii</scientific_name>
		<taxon_id>9067</taxon_id>
    </host>
	<host host_id="host29">
		<common_name>Deer</common_name>
		<scientific_name>Cervus elaphus</scientific_name>
		<taxon_id>9860</taxon_id>
    </host>
	<host host_id="host32">
		<common_name>Deer mouse</common_name>
		<scientific_name>Peromyscus maniculatus</scientific_name>
		<taxon_id>10042</taxon_id>
    </host>
	<host host_id="host36">
		<common_name>Dog</common_name>
		<scientific_name>Canis familiaris</scientific_name>
		<taxon_id>9615</taxon_id>
    </host>
	<host host_id="host9">
		<common_name>Ducks</common_name>
		<scientific_name>Anas</scientific_name>
		<taxon_id>8835</taxon_id>
    </host>
	<host host_id="host19">
		<common_name>Ferret</common_name>
		<scientific_name>Mustela putorius furo</scientific_name>
		<taxon_id>9669</taxon_id>
    </host>
	<host host_id="host48">
		<common_name>Fish</common_name>
		<scientific_name>Hyperotreti</scientific_name>
		<taxon_id>117565</taxon_id>
    </host>
	<host host_id="host41">
		<common_name>Gerbil</common_name>
		<scientific_name>Gerbillina</scientific_name>
		<taxon_id>10045</taxon_id>
    </host>
	<host host_id="host13">
		<common_name>Goat</common_name>
		<scientific_name>Capra hircus</scientific_name>
		<taxon_id>9925</taxon_id>
    </host>
	<host host_id="host47">
		<common_name>Gray wolf</common_name>
		<scientific_name>Canis lupus</scientific_name>
		<taxon_id>9612</taxon_id>
    </host>
	<host host_id="host7">
		<common_name>Guinea pig</common_name>
		<scientific_name>Cavia porcellus</scientific_name>
		<taxon_id>10141</taxon_id>
    </host>
	<host host_id="host16">
		<common_name>Hamster</common_name>
		<scientific_name>Mesocricetus auratus</scientific_name>
		<taxon_id>10036</taxon_id>
    </host>
	<host host_id="host18">
		<common_name>Horse</common_name>
		<scientific_name>Equus caballus</scientific_name>
		<taxon_id>9796</taxon_id>
    </host>
	<host host_id="host2">
		<common_name>Human</common_name>
		<scientific_name>Homo sapiens</scientific_name>
		<taxon_id>9606</taxon_id>
    </host>
	<host host_id="host39">
		<common_name>Macaque</common_name>
		<scientific_name>Macaca fascicularis</scientific_name>
		<taxon_id>9541</taxon_id>
    </host>
	<host host_id="host40">
		<common_name>Mongolian Gerbil</common_name>
		<scientific_name>Meriones unguiculatus</scientific_name>
		<taxon_id>10047</taxon_id>
    </host>
	<host host_id="host5">
		<common_name>Monkey</common_name>
		<scientific_name>Platyrrhini</scientific_name>
		<taxon_id>9479</taxon_id>
    </host>
	<host host_id="host3">
		<common_name>Mouse</common_name>
		<scientific_name>Mus musculus</scientific_name>
		<taxon_id>10090</taxon_id>
    </host>
	<host host_id="host59">
		<common_name>None</common_name>
		<scientific_name>None</scientific_name>
		<taxon_id></taxon_id>
    </host>
	<host host_id="host50">
		<common_name>Parrot</common_name>
		<scientific_name>Psittacidae</scientific_name>
		<taxon_id>9224</taxon_id>
    </host>
	<host host_id="host15">
		<common_name>Pig</common_name>
		<scientific_name>Sus scrofa</scientific_name>
		<taxon_id>9823</taxon_id>
    </host>
	<host host_id="host6">
		<common_name>Rabbit</common_name>
		<scientific_name>Oryctolagus cuniculus</scientific_name>
		<taxon_id>9986</taxon_id>
    </host>
	<host host_id="host45">
		<common_name>Rainbow trout</common_name>
		<scientific_name>Oncorhynchus mykiss</scientific_name>
		<taxon_id>8022</taxon_id>
    </host>
	<host host_id="host4">
		<common_name>Rat</common_name>
		<scientific_name>Rattus</scientific_name>
		<taxon_id>10114</taxon_id>
    </host>
	<host host_id="host34">
		<common_name>Raven</common_name>
		<scientific_name>Corvus corax</scientific_name>
		<taxon_id>56781</taxon_id>
    </host>
	<host host_id="host54">
		<common_name>sei whale</common_name>
		<scientific_name>Balaenoptera borealis</scientific_name>
		<taxon_id>9768</taxon_id>
    </host>
	<host host_id="host17">
		<common_name>Sheep</common_name>
		<scientific_name>Ovis aries</scientific_name>
		<taxon_id>9940</taxon_id>
    </host>
	<host host_id="host28">
		<common_name>Squirrel</common_name>
		<scientific_name>Spermophilus richardsonii</scientific_name>
		<taxon_id>37591</taxon_id>
    </host>
	<host host_id="host44">
		<common_name>Tree shrew</common_name>
		<scientific_name>Tupaiidae</scientific_name>
		<taxon_id>9393</taxon_id>
    </host>
	<host host_id="host49">
		<common_name>Trouts, salmons & chars</common_name>
		<scientific_name>Salmoninae</scientific_name>
		<taxon_id>504568</taxon_id>
    </host>
	<host host_id="host38">
		<common_name>Turkey</common_name>
		<scientific_name>Meleagris gallopavo</scientific_name>
		<taxon_id>9103</taxon_id>
    </host>
	<host host_id="host33">
		<common_name>Vole</common_name>
		<scientific_name>Microtus ochrogaster</scientific_name>
		<taxon_id>79684</taxon_id>
    </host>
	<host host_id="host27">
		<common_name>Water buffalo</common_name>
		<scientific_name>Bubalus bubalis</scientific_name>
		<taxon_id>391902</taxon_id>
    </host>
	<vaccine vaccine_id="vaccine3892">
		<vaccine_name>BVDV DNA vaccine encoding E2</vaccine_name>
		<proper_name></proper_name>
		<brand_name></brand_name>
		<manufacturer></manufacturer>
		<vo_id>VO_0004538</vo_id>
		<type>DNA vaccine</type>
		<status>Research</status>
		<vector>pMASIA [Ref2656:van et al., 2013]</vector>
		<route>Intramuscular injection (i.m.)</route>
		<location_licensed></location_licensed>
		<description refs=""></description>
		<adjuvant refs=""></adjuvant>
		<storage refs=""></storage>
		<virulence refs=""></virulence>
		<preparation refs=""></preparation>
		<route refs="">Intramuscular injection (i.m.)</route>
		<antigen refs="reference2656">E2 from BVDV Q140 (van et al., 2013)</antigen>

		<gene_engineering gene_engineering_id="gene_engineering1504" gene_id="gene1679">
			<type>DNA vaccine construction</type>
			<description refs=""></description>
		</gene_engineering>
		<host_response host_response_id="host_response1534" host_id="host12">
			<immune_response refs=""></immune_response>
			<host_strain refs=""></host_strain>
			<vaccination_protocol refs=""></vaccination_protocol>
			<persistence refs=""></persistence>
			<immune_response_type refs="">VO_0000286</immune_response_type>
			<immune_response_type refs=""></immune_response_type>
			<protection_efficacy refs="reference2656">Two doses of this vaccine spaced 6 or 12 weeks apart were sufficient to induce significant virus-neutralizing antibody titers, numbers of activated T cells, and reduction in viral shedding and clinical presentations after BVDV-2 challenge. In contrast to the placebo-treated animals, the vaccinated calves did not lose any weight, which is an excellent indicator of the well-being of an animal and has a significant economic impact (van et al., 2013).</protection_efficacy>
			<side_effects refs=""></side_effects>
			<challenge_protocol refs=""></challenge_protocol>
			<description refs=""></description>
		</host_response>
	</vaccine>
	<vaccine vaccine_id="vaccine6124">
		<vaccine_name>BVDV2 Modified Live Virus (MLV) Vaccine</vaccine_name>
		<proper_name></proper_name>
		<brand_name></brand_name>
		<manufacturer></manufacturer>
		<vo_id></vo_id>
		<type>Modified Live Virus Vaccine</type>
		<status>Research</status>
		<vector></vector>
		<route>not specified</route>
		<location_licensed></location_licensed>
		<description refs="reference5908">Adjuvanted modified-live bovine viral diarrhea virus (BVDV) vaccine protects against BVDV2. (Zimmerman et al., 2006)</description>
		<adjuvant refs=""></adjuvant>
		<storage refs=""></storage>
		<virulence refs=""></virulence>
		<preparation refs=""></preparation>
		<route refs="">not specified</route>
		<antigen refs="reference5908">Bovine rhinotracheitis, BVDV (types 1 and 2), bovine parainfluenza-3, and bovine respiratory syncytial virus. (Zimmerman et al., 2006)</antigen>
		<host_response host_response_id="host_response2686" host_id="host12">
			<immune_response refs="reference5908">On the day of challenge (day 104), calves in group 1 were seronegative. Group 2 antibody responses continued to increase, with a mean BVDV type 1 serum neutralizing titer of 9.4log2 and a mean type 2 titer of 5.6log2. Titers in group 3 were decreased, compared with titers on day 28. Titers against type 1 virus decreased 1.9log2 to 5.8log2, and titers against type 2 virus decreased 2.8log2 to 4.2log2. The decreases in titers of both types of antibodies were significant (P &lt; 0.05). At 1 week after challenge (day 111), control calves had begun to develop serum neutralizing antibody titers against BVDV type 2. Serum neutralizing antibody titers against type 2 virus in group 2 increased by 3.0log2 to 8.6log2 and increased by 0.2log2 to 4.4log2 in group 3. At 2 weeks after challenge (day 118), all 3 groups had increases (P &lt; 0.05) in titers against both type 1 and 2 BVDV, compared with titers on day 111. (Zimmerman et al., 2006)</immune_response>
			<host_strain refs=""></host_strain>
			<vaccination_protocol refs="reference5908">Twenty-one calves were vaccinated at approximately 5 weeks of age (day 0). Fourteen calves were vaccinated. The other 7 calves were sham vaccinated with sterile saline (0.9% NaCl) solutiong and served as controls. All calves were observed daily after vaccination for vaccine-related adverse events. Calves in group 1 were designated as control calves, calves in group 2 were designated as colostral antibodyâ€“negative and vaccinated, and calves in group 3 were designated a colostral antibodyâ€“positive and vaccinated. Calves in group 1 (n = 7) and group 2 (9) were fed 2 L of pooled colostrum that did not contain antibodies against BVDV within 6 hours of birth and were given a second 2-L feeding of colostrum 8 to 12 hours later. Calves in group 3 (n = 7) were given colostrum containing antibodies against BVDV. (Zimmerman et al., 2006)</vaccination_protocol>
			<persistence refs=""></persistence>
			<immune_response_type refs=""></immune_response_type>
			<immune_response_type refs=""></immune_response_type>
			<protection_efficacy refs="reference5908">Calves that received colostrum free of antiBVDV antibodies and were vaccinated with the sham vaccine developed severe disease (4 of the 7 calves died or were euthanatized). Calves that received colostrum free of anti-BVDV antibodies and were vaccinated and calves that received colostrum with antiBVDV antibodies and were vaccinated developed only mild or no clinical signs of disease. (Zimmerman et al., 2006)</protection_efficacy>
			<side_effects refs="reference5908">Adverse vaccine reactions were not observed in any calves. (Zimmerman et al., 2006)</side_effects>
			<challenge_protocol refs="reference5908">All 20 remaining calves received BVDV type 2 (strain 1373) intranasally by use of an atomizer 104 days after vaccination. The challenge inoculum contained 7.3 Ã— 10^7 viral particles/mL, and 2.5 mL was atomized into each naris (total volume, 5.0 mL/calf). (Zimmerman et al., 2006)</challenge_protocol>
			<description refs=""></description>
		</host_response>
	</vaccine>
	<gene gene_id="gene1679">
        <gene_name>E2</gene_name>
        <strain>Bovine viral diarrhea virus 2 TC Shinozaki NCP/92</strain>
        <vo_id></vo_id>
        <ncbi_gene_id></ncbi_gene_id>
        <ncbi_nucleotide_id></ncbi_nucleotide_id>
        <ncbi_protein_id>49614538</ncbi_protein_id>
        <gene_locus_tag></gene_locus_tag>
        <gene_refseq></gene_refseq>
        <protein_refseq></protein_refseq>
        <pdb_id></pdb_id>
        <xrefs>CDD:292945</xrefs>
        <taxonomy_id>54315</taxonomy_id>
        <chromosome></chromosome>
        <segment></segment>
        <plasmid></plasmid>
        <gene_start></gene_start>
        <gene_end></gene_end>
        <gene_strand>?</gene_strand>
        <protein_name>structural glycoprotein E2</protein_name>
        <protein_pi>7.92</protein_pi>
        <protein_weight>15011.76</protein_weight>
        <protein_length>223</protein_length>
        <protein_note>synonym: Bovine viral diarrhea virus genotype 2;
synonym: Bovine viral diarrhea virus-2</protein_note>
        <protein_annotation></protein_annotation>
        <dna_sequence></dna_sequence>
        <protein_sequence>>BAD27019.1 structural glycoprotein E2, partial [Bovine viral diarrhea virus 2]
CTLANQDTLGTTVIRTYRRTTPFQRRKWCAYEKIIGEDIHECILGGNWTCIIGDHSKLKDGPIKKSKWCG
YDFSSPEGLPHYPIGKCMLSNESGYRYVDDTSCDRGGVAIVPTGTVKCRIGNVTVQVIATNKDLGPMPCS

</protein_sequence>
        <phi_function>Protective antigen</phi_function>
        <phi_annotation></phi_annotation>
        <phi_function2></phi_function2>
        <phi_annotation2></phi_annotation2>
    </gene>
	<reference reference_id="reference2655">
		<reference_name>Liang et al., 2008</reference_name>
		<reference_type>journal</reference_type>
		<authors>Liang R, van den Hurk JV, Landi A, Lawman Z, Deregt D, Townsend H, Babiuk LA, van Drunen Littel-van den Hurk S</authors>
		<title>DNA prime protein boost strategies protect cattle from bovine viral diarrhea virus type 2 challenge</title>
		<year>2008</year>
		<volume>89</volume>
		<issue>Pt 2</issue>
		<pages>453-466</pages>
		<journal_book_name>The Journal of general virology</journal_book_name>
		<publisher></publisher>
		<publisher_location></publisher_location>
		<book_editors></book_editors>
		<isbn></isbn>
		<university></university>
		<university_location></university_location>
		<degree></degree>
		<url></url>
		<file_name></file_name>
	</reference>
	<reference reference_id="reference2657">
		<reference_name>Merck Vet Manual: Bovine Viral Diarrhea</reference_name>
		<reference_type>website</reference_type>
		<authors></authors>
		<title>Merck Vet Manual: Bovine Viral Diarrhea and Mucosal Disease Complex</title>
		<year></year>
		<volume></volume>
		<issue></issue>
		<pages></pages>
		<journal_book_name></journal_book_name>
		<publisher></publisher>
		<publisher_location></publisher_location>
		<book_editors></book_editors>
		<isbn></isbn>
		<university></university>
		<university_location></university_location>
		<degree></degree>
		<url>http://www.merckmanuals.com/vet/digestive_system/intestinal_diseases_in_ruminants/intestinal_diseases_in_cattle.html#v3263133?qt=&sc=&alt=</url>
		<file_name></file_name>
	</reference>
	<reference reference_id="reference2656">
		<reference_name>van et al., 2013</reference_name>
		<reference_type>journal</reference_type>
		<authors>van Drunen Littel-van den Hurk S, Lawman Z, Snider M, Wilson D, van den Hurk JV, Ellefsen B, Hannaman D</authors>
		<title>Two doses of bovine viral diarrhea virus DNA vaccine delivered by electroporation induce long-term protective immune responses</title>
		<year>2013</year>
		<volume>20</volume>
		<issue>2</issue>
		<pages>166-173</pages>
		<journal_book_name>Clinical and vaccine immunology : CVI</journal_book_name>
		<publisher></publisher>
		<publisher_location></publisher_location>
		<book_editors></book_editors>
		<isbn></isbn>
		<university></university>
		<university_location></university_location>
		<degree></degree>
		<url></url>
		<file_name></file_name>
	</reference>
</VIOLIN>


