VIOLIN Logo
VO Banner
Search: for Help
About
Introduction
Statistics
VIOLIN News
Your VIOLIN
Register or Login
Submission
Tutorial
Vaccine & Components
Vaxquery
Vaxgen
VBLAST
Protegen
VirmugenDB
DNAVaxDB
CanVaxKB
Vaxjo
Vaxvec
Vevax
Huvax
Cov19VaxKB
Host Responses
VaximmutorDB
VIGET
Vaxafe
Vaxar
Vaxism
Vaccine Literature
VO-SciMiner
Litesearch
Vaxmesh
Vaxlert
Vaccine Design
Vaxign2
Vaxign
Community Efforts
Vaccine Ontology
ICoVax 2012
ICoVax 2013
Advisory Committee
Vaccine Society
Vaxperts
VaxPub
VaxCom
VaxLaw
VaxMedia
VaxMeet
VaxFund
VaxCareer
Data Exchange
V-Utilities
VIOLINML
Help & Documents
Publications
Documents
FAQs
Links
Acknowledgements
Disclaimer
Contact Us
UM Logo

ORF

Gene Name ORF
Sequence Strain (Species/Organism) Infectious pancreatic necrosis virus
NCBI Nucleotide GI 221910
NCBI Protein GI 221911
Protein Accession BAA00608.1
Other Database IDs CDD:281092
Taxonomy ID 11002
Gene Strand (Orientation) ?
Protein Name small ORF
Protein pI 10.04
Protein Weight 17095.06
Protein Length 213
Protein Note 5' end of plus-strand segment A.
DNA Sequence 
>gi|221910|dbj|D00701.1|IPNSEGA Infectious pancreatic necrosis virus genes for small ORF, large ORF
GTGTGTTTGACAGAAAGAGAGTTTCAACGTTAGTGGTAACCCACGAGCGGAGAGCTCTTACGGAGGAGCT
CTCCGTCGATGGCGAAAGCCCTTTCTAACAAACAAACAAACAATCTATATTCAATACAAGATGAACACAA
ACAAGGCAACCGCAACTTACTTGAAATCCATTATGCTTCCAGAGACTGGACCAGCAAGCATCCCGGACGA
CATAACGGAGAGACACATCCTAAAACAAGAGACCTCGTCATACAACCTAGAGGTCTCCGAATCAGGAAGT
GGCATTCTTGTTTGTTTCCCTGGGGCACCAGGCTCACGGATCGGTGCACACTACAGATGGAATGCGAACC
AGACGGGGCTGGAGTTCGACCAGTGGCTGGAGACGTCGCAGGACCTGAAGAAAGCCTTCAACTACGGGAG
GCTGATCTCAAGGAAATACGACATCCAAAGCTCCACACTACCGGCCGGTCTCTATGCTCTGAACGGGACG
CTCAACGCTGCCACCTTCGAAGGCAGTCTGTCTGAGGTGGAGAGCCTGACCTACAACAGCCTGATGTCCC
TAACAACGAACCCCCAGGACAAAGTCAACAACCAGCTGGTGACCAAAGGAGTCACAGTCCTGAATCTACC
AACAGGGTTCGACAAACCATACGTCCGCCTAGAGGACGAGACACCCCAGGGTCTCCAGTCAATGAACGGG
GCCAAGATGAGGTGCACAGCTGCAATTGCACCGCGGAGGTACGAGATCGACCTCCCATCCCAACGCCTAC
CCCCCGTTCCTGCGACAGGAACCCTCACCACTCTCTACGAGGGAAACGCCGACATCGTCAACTCCACAAC
AGTGACGGGAGACATAAACTTCAGTCTGGCAGAACAACCCGCGAACGAGACCAAGTTCGACTTCCAGCTG
GACTTCATGGGCCTTGACAACGACGTCCCAGTTGTCACAGTGGTCAGCTCCGTGCTGGCCACAAATGACA
ACTACAGAGGAGTCTCAGCCAAGATGACCCAGTCCATCCCGACCGAGAACATCACAAAGCCGATCACCAG
GGTCAAGCTGTCATACAAGATCAACCAGCAGACAGCAATCGGCAACGTCGCCACCCTGGGCACAATGGGT
CCGACTACCGTCTCCTTCTCATCAGGGAACGGAAATGTCCCCGGCGTGCTCAGACCAATCACACTGGTGG
CCTATGAGAAGATGACACCGCTGTCCATCCTGACCGTAGCTGGAGTGTCCAACTACGAGTCGTACCCAAA
CCCAGAACTCCTCAAGAACATGGTGACACGCTATGGCAAGTACGACCCCGAAGGTCTCAACTATGCCAAG
ATGATCCTGTCCCACAGGGAAGAGCTGGACATCAGGACAGTGTGGAGGACAGAGGAGTACAAGGAGAGGA
CCAGAGTCTTCAACGAAATCACGGACTTCTCCAGTGACCTGCCCACGTCAAAGGCATGGGGCTGGAGAGA
CATAGTCAGAGGAATTCGGAAAGTCGCAGCTCCTGTACTGTCCACGCTGTTTCCAATGGCAGCACCACTC
ATAGGAATGGCAGACCAATTCATTGGAGATCTCACCAAGACCAACGCAGCAGGCGGAAGGTACCACTCCA
TGGCCGCAGGAGGGCGCCACAAAGACGTGCTCGAGTCCTGGGCAAGCGGAGGGCCCGACGGAAAATTCTC
CCGAGCCCTCAAGAACAGGCTGGAGTCCGCCAACTACGAGGAAGTCGAGCTTCCACCCCCCTCAAAAGGA
GTCATCGTCCCTGTGGTGCACACAGTCAAGAGTGCACCAGGCGAGGCATTCGGGTCCCTGGCAATCATAA
TTCCAGGGGAGTACCCCGAGCTTCTAGATGCCAACCAGCAGGTCCTATCCCACTTCGCAAACGACACCGG
GAGCGTGTGGGGCATAGGAGAGGACATACCCTTCGAGGGAGACAACATGTGCTACACTGCACTCCCACTC
AAGGAGATCAAAAGAAACGGGAACATAGTAGTCGAGAAGATCTTTGCTGGACCAATCATGGGTCCCTCTG
CTCAACTAGGACTGTCCCTACTTGTGAACGACATCGAGGACGGAGTTCCAAGGATGGTATTCACCGGCGA
AATCGCCGATGACGAGGAGACAATCATACCAATCTGCGGTGTAGACATCAAAGCCATCGCAGCCCATGAA
CCAGGGCTGCCACTCATCGGCAACCAACCAGGAGTGGACGAGGAGGTGCGAAACACATCCCTGGCCGCAC
ACCTGATCCAGACCGGAACCCTGCCCGTACAACGAGCAAAGGGCTCCAACAAGAGGATCAAGTACCTGGG
AGAGCTGATGGCATCAAATGCATCCGGGATGGACGAGGAACTGCAACGCCTCCTGAACGCCACAATGGCA
CGGGCCAAAGAAGTCCAGGACGCCGAGATCTACAAACTTCTTAAGCTCATGGCATGGACCAGAAAGAACG
ACCTCACCGACCACATGTACGAGTGGTCAAAAGAGGACCCCGATGCACTAAAGTTCGGAAAGCTCATCAG
CACGCCACCAAAGCACCCTGAGAAGCCCAAAGGACCAGACCAACACCACGCCCAAGAGGCGAGAGCCACC
CGCATATCACTGGACGCCGTGAGAGCCGGGGCGGACTTCGCCACACCGGAATGGGTCGCGCTGAACAACT
ACCGCGGCCCATCTCCCGGGCAGTTCAAGTACTACCTGATCACTGGACGAGAACCAGAACCAGGCGACGA
GTACGAGGACTACATAAAACAACCCATTGTGAAACCGACCGACATGAACAAAATCAGACGTCTAGCCAAC
AGTGTGTACGGCCTCCCACACCAGGAACCAGCACCAGAGGAGTTCTACGATGCAGTTGCAGCTGTATTCG
CACAGAACGGAGGCAGAGGTCCCGACCAGGACCAAATGCAAGACCTCAGGGAGCTCGCAAGACAGATGAA
ACGACGACCCCGGAACGCCGATGCACCACGGAGAACCAGAGCGCCAGCGGAACCGGCACCGCCCGGACGC
TCAAGGTTCACCCCCAGCGGAGACAACGCTGAGGTGTAACGACTACTCTCTTTCCTGACTGATCCCCTGG
CCAAAACCCCGGCCCCCCAGGGGG
Protein Sequence 
>BAA00608.1 small ORF [Infectious pancreatic necrosis virus]
MAKALSNKQTNNLYSIQDEHKQGNRNLLEIHYASRDWTSKHPGRHNGETHPKTRDLVIQPRGLRIRKWHS
CLFPWGTRLTDRCTLQMECEPDGAGVRPVAGDVAGPEESLQLREADLKEIRHPKLHTTGRSLCSERDAQR
CHLRRQSV
Molecule Role Protective antigen
Related Vaccines(s) IPNV DNA vaccine pEGFP-N1-SegA and pEGFP-N1-VP2
References