VIOLIN Logo
VO Banner
Search: for Help
Protegen Home
Introduction
Statistics
News and Updates
Protegen Query
Protegen BLAST
Selected Bacteria
Brucella spp. (26)
B. anthracis (14)
E. coli (40)
M. tuberculosis (26)
N. meningitidis (18)
Selected Viruses
Ebola virus (19)
HIV (41)
Influenza virus (50)
Selected Parasites
Plasmodium (47)
Data Submission
Data Exchange
Data Download
Documentation
FAQs
Disclaimer
Contact Us
UMMS Logo


ORF1

General Information
Protegen ID 1669
Sequence Strain (Species/Organism) Rabbit hemorrhagic disease virus
Taxonomy ID 11976
Other Database IDs CDD:279283
CDD:165513
GOA:Q86119
InterPro: IPR000317
InterPro: IPR000605
InterPro: IPR001205
InterPro: IPR003593
InterPro: IPR004004
InterPro: IPR004005
InterPro: IPR007094
InterPro: IPR009003
InterPro: IPR014759
UniProtKB/UniProt: Q86119
Molecule Role Protective antigen
Related Vaccines(s) RHDV DNA vaccine pcDNA-VP60 , rORFV-RHDV-VP60
References  
Gene Information
Gene Name ORF1
Protein Information
Protein Name VP60
NCBI Protein GI 515625
Protein pI 4.97
Protein Weight 55535.12
Protein Length 641
Protein Note Calicivirus coat protein; pfam00915
Protein Sequence 
>CAA80883.1 VP60 [Rabbit hemorrhagic disease virus]
MEGKARTAPQGEAAGTATTASVPGTTTDGMDPGVVATTSVVTAENSSASIATAGIGGPPQQVDQQETWRT
NFYYNDVFTWSVADAPGSILYTVQHSPQNNPFTAVLSQMYAGWAGGMQFRFIVAGIGVFGGRLVAAVIPP
GIEIGPGLEVRQFPHVVIDARSLEPVTITMPDLRPNMYHPTGDPGLVPTLVLSVYNNLINPFGGSTSAIQ
VTVETRPSEDFEFVMIRAPSSKTVDSISPAGLLTTPVLTGVGNDNRWNGQIVGLQPVPGGFSTCNRHWNL
NGSTYGWSSPRFGDIGHRRGSASYPGNNATNVLQFWYANAGSAIDNPISQVAPDGFPDMSFVPFNGPGIP
AAGWVGFGAIWNSNSGAPNVTTVQAYELGFATGAPGNLQPTTNTSGSQTVAKSIYAVVTGTAQNPAGLFV
MASGVISTPSANAITYTPQPDRIVTTPGTPAAAPVGKNTPIMFASVVRRTGDVNATAGSANGTQYGTGSQ
PLPVTIGLSLNNYSSALMPGQFFVWQLTFASGFMEIGLSVDGYFYAGTGASTTLIDLTELIDVRPVGPRP
SKSTLVFNLGGTANGFSYV
Epitope Information
IEDB Linear Epitope