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Vaxvec Antigens BLAST Search

     The DNA and protein sequences of protective antigens that have been used in experimentally verified recombinant vector vaccines stored Vaxvec have been used to make costomized BLAST programs. Please provide your sequence data as input. The output will be DNA or protein sequences for those protective antigens that have been stored in Vaxvec and share DNA/protein sequences with your input sequence(s).

     The Vaxvec BLAST search program is available below:

Vaxvec BLAST search for protective genes and proteins in verified recombinant vector vaccines:
Program Database
Enter here your input data as   

Or load it from disk

Please read about FASTA format description

Set subsequence: From To

The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only

Expect    Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)

Database Genetic Codes (tblast[nx] only)

Frame shift penalty for blastx

Limit search to results of Entrez query

Other advanced options:        Show Tax Blast reports

   NCBI-gi      Graphical Overview    Alignment view
Descriptions    Alignments Color schema


Any feedback is welcome and appreciated. Thank you!