Community Efforts
- 1/12/2024: Our CanVaxKB cancer vaccine knowledgebase was published in NAR Cancer (PMID: 38204924, PMCID: PMC10776203).
- 12/1/2023: We published a Vaxign-DL BioRxiv paper introducing our Vaxign-DL deep learning program.
- 11/11/2023: Oliver He presented VIOLIN vaccine knowledgebase in the Knowledge Representation and Semantics Working Group Pre-Symposium (KRS-WG-2023) at AMIA 2023, New Orleans.
- 10/20-22/2023: Yuanyi "Penny" Pan and Oliver He attended 2023 OHDSI Symposium, East Brunswick, New Jersey, and presented a poster titled "Harmonization of OMOP vaccine-related vocabularies through the Vaccine Ontology".
- 08/29/2023: Cui, Junguk, and Oliver co-organized the International Workshop on Vaccine and Drug Ontology Studies (VDOS-2023), associated with the ICBO-ONTOBRAS, Brasilia, Brazil, at 08/28-09/01/2023. Our VIOLIN team also presented many papers/studies in VDOS-2023 and the main ICBO-ONTOBRAS conference.
- 02/28/2023: Asiyah presented the OHDSI Vaccine Vocabulary WG Objectives and Key Results (OKR) in the OHDSI community call on Feb 28, 2023.
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Latest Vaccine Publications >>
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Zhou Y, Dong J, Lu H. Predictors and Clinical Significance of Myocardial Injury in Elderly Patients Under the COVID-19 Pandemic International journal of general medicine 17:1369-1379 2024 [PMID: 38601195]
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Liew F, Efstathiou C, Fontanella S, Richardson M, Saunders R, Swieboda D, Sidhu JK, Ascough S, Moore SC, Mohamed N, Nunag J, King C, Leavy OC, Elneima O, McAuley HJC, Shikotra A, Singapuri A, Sereno M, Harris VC, Houchen-Wolloff L, Greening NJ, Lone NI, Thorpe M, Thompson AAR, Rowland-Jones SL, Docherty AB, Chalmers JD, Ho LP, Horsley A, Raman B, Poinasamy K, Marks M, Kon OM, Howard LS, Wootton DG, Quint JK, de Silva TI, Ho A, Chiu C, Harrison EM, Greenhalf W, Baillie JK, Semple MG, Turtle L, Evans RA, Wain LV, Brightling C, Thwaites RS, Openshaw PJM. Large-scale phenotyping of patients with long COVID post-hospitalization reveals mechanistic subtypes of disease Nature immunology 25(4):607-621 2024 [PMID: 38589621]
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Statistics: The VIOLIN vaccine database contains
4708 vaccines or vaccine candidates for
219 pathogens by manual curation from
4982 peer-reviewed papers. It also contains 24,345 vaccine-related abstracts and 10,317 full text documents.
Please cite this publication for VIOLIN:
He Y, Racz R, Sayers S, Lin Y, Todd T, Hur J, Li X, Patel M, Zhao B, Chung M, Ostrow J, Sylora A, Dungarani P, Ulysse G, Kochhar K, Vidri B, Strait K, Jourdian GW, Xiang Z. Updates on the web-based VIOLIN vaccine database and analysis system. Nucleic Acids Research. 2014. 42 (D1): D1124-D1132. doi: 10.1093/nar/gkt1133. First published online: November 19, 2013. [NAR] [PubMed PMID: 24259431] [PDF] [PMCID: PMC3964998]
Or the previous VIOLIN manuscript:
Zuoshuang Xiang, Thomas Todd, Kim P. Ku, Bethany L. Kovacic, Charles B. Larson, Fang Chen, Andrew P. Hodges, Yuying Tian, Elizabeth A. Olenzek, Boyang Zhao, Lesley A. Colby, Howard G. Rush, Janet R. Gilsdorf, George W. Jourdian, Yongqun He. VIOLIN: Vaccine Investigation and Online Information Network. Nucleic Acids Res. 2008 Jan;36(Database issue):D923-8. [NAR] [PubMed PMID: 18025042] [PMCID: PMC2238972] [PDF].
More publications for citing specific VIOLIN programs
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